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1

CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases

Fan, Chunyan, Lei, Xiujuan, Fang, Zengqiang, Jiang, Qinghua, Wu, Fang-Xiang

Journal:

Year:

2018

Language:

english

File:

PDF, 1.05 MB

english, 2018

2

Deep learning for brain disorder diagnosis based on fMRI images

Yin, Wutao, Li, Longhai, Wu, Fang-Xiang

Journal:

Year:

2020

File:

PDF, 327 KB

2020

3

Recurrent Neural Network for Non-Smooth Convex Optimization Problems With Application to the Identification of Genetic Regulatory Networks

Long Cheng,, Zeng-Guang Hou,, Yingzi Lin,, Min Tan,, Zhang, W C, Fang-Xiang Wu,

Journal:

IEEE Transactions on Neural Networks

Year:

2011

Language:

english

File:

PDF, 541 KB

english, 2011

4

Applications of graph theory in protein structure identification

Yan Yan, Shenggui Zhang, Fang-Xiang Wu

Journal:

Proteome Science

Year:

2011

Language:

english

File:

PDF, 252 KB

english, 2011

5

Stability and Bifurcation Analysis of Models for Zebrafish Somitogenesis

Li-Ping Tian, Fang-Xiang Wu

Journal:

IEEE Transactions on NanoBioscience

Year:

2011

Language:

english

File:

PDF, 3.32 MB

english, 2011

6

Delay-Independent Stability of Genetic Regulatory Networks

Journal:

IEEE Transactions on Neural Networks

Year:

2011

Language:

english

File:

PDF, 340 KB

english, 2011

7

Inference of Biological S-System Using the Separable Estimation Method and the Genetic Algorithm

Li-Zhi Liu,, Fang-Xiang Wu,, Zhang, W. J.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 703 KB

english, 2012

8

[IEEE 2010 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010) - Buenos Aires (2010.08.31-2010.09.4)] 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology - Identification of gene regulatory networks from time course gene expression data

Fang-Xiang Wu,, Li-Zhi Liu,, Zhang-Hang Xia,

Year:

2010

Language:

english

File:

PDF, 378 KB

english, 2010

9

CytoNCA: A cytoscape plugin for centrality analysis and evaluation of protein interaction networks

Tang, Yu, Li, Min, Wang, Jianxin, Pan, Yi, Wu, Fang-Xiang

Journal:

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

10

OPTIMALLY-CONNECTED HIDDEN MARKOV MODELS FOR PREDICTING MHC-BINDING PEPTIDES

ZHANG, CHENHONG, BICKIS, MIKELIS G., WU, FANG-XIANG, KUSALIK, ANTHONY J.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2006

Language:

english

File:

PDF, 465 KB

english, 2006

11

Nonlinear-Model-Based Analysis Methods for Time-Course Gene Expression Data

Tian, Li-Ping, Liu, Li-Zhi, Wu, Fang-Xiang

Journal:

The Scientific World JOURNAL

Year:

2014

Language:

english

File:

PDF, 2.32 MB

english, 2014

12

Controlled-phase manipulation module for orbital-angular-momentum photon states

Wang, Fang-Xiang, Wu, Juan, Chen, Wei, Yin, Zhen-Qiang, Wang, Shuang, Guo, Guang-Can, Han, Zheng-Fu

Journal:

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

13

Control principles for complex biological networks

Li, Min, Gao, Hao, Wang, Jianxin, Wu, Fang-Xiang

Journal:

Briefings in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

14

Proof of principle implementation of phase-flip error rejection quantum key distribution

Wu, Juan, An, Xue-Bi, Yin, Zhen-Qiang, Wang, Fang-Xiang, Chen, Wei, Wang, Shuang, Guo, Guang-Can, Han, Zheng-Fu

Journal:

Year:

2018

Language:

english

File:

PDF, 1.39 MB

english, 2018

15

An interpretable boosting model to predict side effects of analgesics for osteoarthritis

Liu, Liangliang, Yu, Ying, Fei, Zhihui, Li, Min, Wu, Fang-Xiang, Li, Hong-Dong, Pan, Yi, Wang, Jianxin

Journal:

BMC Systems Biology

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

16

Diagnosis of Autism Spectrum Disorder Based on Eigenvalues of Brain Networks

Mostafa, Sakib, Tang, LingKai, Wu, Fang-Xiang

Journal:

Year:

2019

Language:

english

File:

PDF, 1.35 MB

english, 2019

17

Diagnosis of Autism Spectrum Disorder Based on Eigenvalues of Brain Networks

Mostafa, Sakib, Tang, LingKai, Wu, Fang-Xiang

Journal:

Year:

2019

File:

PDF, 1.35 MB

2019

18

Predicting drug-drug interactions based on integrated similarity and semi-supervised learning

Yan, Cheng, Duan, Guihua, Zhang, Yayan, Wu, Fang-Xiang, Pan, Yi, Wang, Jianxin

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2020

File:

PDF, 786 KB

2020

19

Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation

Jinhong Shi, Fang-Xiang Wu

Journal:

Proteome Science

Year:

2011

Language:

english

File:

PDF, 213 KB

english, 2011

20

An adaptive approach to denoising tandem mass spectra

Wenjun Lin, Fang-Xiang Wu, Jinhong Shi, Jiarui Ding, Wenjun Zhang

Journal:

Year:

2011

Language:

english

File:

PDF, 159 KB

english, 2011

21

Speed improvements of peptide–spectrum matching using Single-Instruction Multiple-Data instructions

Jian Zhang, Ian McQuillan, Fang-Xiang Wu

Journal:

Year:

2011

Language:

english

File:

PDF, 504 KB

english, 2011

22

RT-PSM, a real-time program for peptide-spectrum matching with statistical significance

Fang-Xiang Wu, Pierre Gagné, Arnaud Droit, Guy G. Poirier

Journal:

Rapid Communications in Mass Spectrometry

Year:

2006

Language:

english

File:

PDF, 187 KB

english, 2006

23

Quality Assessment of Tandem Mass Spectra by Using a Weighted K-Means

Jiarui Ding, Jinhong Shi, Fang-Xiang Wu

Journal:

Clinical Proteomics

Year:

2009

Language:

english

File:

PDF, 270 KB

english, 2009

24

Extraction of actinides from simulated HLLW by DHDECMP-TBP/OK

Ye Yu-xing, Hu Jin-xin, Huang Zi-lin, Shi Wei-qun, Wu Guang-min, Tang Hong-bin, Zhu Wen-bin, Wang Xiao-rong, Zhao Hu-gen, Dong Yu, Sheng Dong, Luo Fang-xiang, Zhao Yan-ju

Journal:

Journal of Radioanalytical and Nuclear Chemistry

Year:

2004

Language:

english

File:

PDF, 762 KB

english, 2004

25

DYNAMIC MODEL-BASED CLUSTERING FOR TIME–COURSE GENE EXPRESSION DATA

WU, FANG-XIANG, ZHANG, W. J., KUSALIK, ANTHONY J.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2005

Language:

english

File:

PDF, 342 KB

english, 2005

26

Mining, Modeling, and Evaluation of Subnetworks From Large Biomolecular Networks and Its Comparison Study

Xiaohua Hu, Ng, M., Fang-Xiang Wu, Sokhansanj, B.A.

Journal:

IEEE Transactions on Information Technology in Biomedicine

Year:

2009

Language:

english

File:

PDF, 384 KB

english, 2009

27

Dynamic-Model-Based Method for Selecting Significantly Expressed Genes From Time-Course Expression Profiles

Fang-Xiang Wu, Wen-Jun Zhang

Journal:

IEEE Transactions on Information Technology in Biomedicine

Year:

2010

Language:

english

File:

PDF, 496 KB

english, 2010

28

Charge State Determination of Peptide Tandem Mass Spectra Using Support Vector Machine (SVM)

An-Min Zou, Jinhong Shi, Jiarui Ding, Fang-Xiang Wu

Journal:

IEEE Transactions on Information Technology in Biomedicine

Year:

2010

Language:

english

File:

PDF, 181 KB

english, 2010

29

Quality assessment of tandem mass spectra using support vector machine (SVM)

An-Min Zou, Fang-Xiang Wu, Jia-Rui Ding, Guy G Poirier

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 378 KB

english, 2009

30

Inference of gene regulatory subnetworks from time course gene expression data

Liang, Xi-Jun, Xia, Zhonghang, Zhang, Li-Wei, Wu, Fang-Xiang

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.70 MB

english, 2012

31

Determination of the minimum number of microarray experiments for discovery of gene expression patterns

Fang-Xiang Wu, WJ Zhang, Anthony J Kusalik

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 270 KB

english, 2006

32

Mining and state-space modeling and verification of sub-networks from large-scale biomolecular networks

Xiaohua Hu, Fang-Xiang Wu

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.13 MB

english, 2007

33

Quality assessment of peptide tandem mass spectra

Fang-Xiang Wu, Pierre Gagné, Arnaud Droit, Guy G Poirier

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 252 KB

english, 2008

34

Genetic weighted k-means algorithm for clustering large-scale gene expression data

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 278 KB

english, 2008

35

An unsupervised machine learning method for assessing quality of tandem mass spectra

Lin, Wenjun, Wang, Jianxin, Zhang, Wen-Jun, Wu, Fang-Xiang

Journal:

Proteome Science

Year:

2012

Language:

english

File:

PDF, 392 KB

english, 2012

36

Stability and Bifurcation of Ring-Structured Genetic Regulatory Networks With Time Delays

Journal:

IEEE Transactions on Circuits and Systems I: Regular Papers

Year:

2012

Language:

english

File:

PDF, 2.39 MB

english, 2012

37

Reverse engineering of gene regulatory networks from biological data

Li-Zhi Liu, Fang-Xiang Wu, Wen-Jun Zhang

Journal:

Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery

Year:

2012

Language:

english

File:

PDF, 456 KB

english, 2012

38

Global and Robust Stability Analysis of Genetic Regulatory Networks With Time-Varying Delays and Parameter Uncertainties

Journal:

IEEE Transactions on Biomedical Circuits and Systems

Year:

2011

Language:

english

File:

PDF, 376 KB

english, 2011

39

[IEEE 2008 Canadian Conference on Electrical and Computer Engineering - CCECE - Niagara Falls, ON, Canada (2008.05.4-2008.05.7)] 2008 Canadian Conference on Electrical and Computer Engineering - Complexity analysis and optimal experimental design for parameter estimation of biological systems

Fang-Xiang Wu,, Lei Mu,, Ruizhi Luo,

Year:

2008

Language:

english

File:

PDF, 135 KB

english, 2008

40

[IEEE 2009 3rd International Conference on Bioinformatics and Biomedical Engineering (iCBBE) - Beijing, China (2009.06.11-2009.06.13)] 2009 3rd International Conference on Bioinformatics and Biomedical Engineering - Separable Parameter Estimation Method for Nonlinear Biological Systems

Wu, Fang-Xiang, Mu, Lei

Year:

2009

Language:

english

File:

PDF, 241 KB

english, 2009

41

Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy

Chen, Bolin, Shi, Jinhong, Zhang, Shenggui, Wu, Fang-Xiang

Journal:

Year:

2013

Language:

english

File:

PDF, 833 KB

english, 2013

42

Unifying protein inference and peptide identification with feedback to update consistency between peptides

Shi, Jinhong, Chen, Bolin, Wu, Fang-Xiang

Journal:

Year:

2013

Language:

english

File:

PDF, 729 KB

english, 2013

43

Focus on Bioinformatics in Proteomics

Wu, Fang-Xiang, Ressom, Habtom, Dunn, Michael J.

Journal:

Year:

2013

Language:

english

File:

PDF, 556 KB

english, 2013

44

Computational approaches to predicting essential proteins: A survey

Wang, Jianxin, Peng, Wei, Wu, Fang-Xiang

Journal:

PROTEOMICS - Clinical Applications

Year:

2013

Language:

english

File:

PDF, 520 KB

english, 2013

45

A novel approach to denoising ion trap tandem mass spectra

Jiarui Ding, Jinhong Shi, Guy G Poirier, Fang-Xiang Wu

Journal:

Proteome Science

Year:

2009

Language:

english

File:

PDF, 344 KB

english, 2009

46

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks

Wei Peng, Jianxin Wang, Weiping Wang, Qing Liu, Fang-Xiang Wu, Yi Pan

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 1.39 MB

english, 2012

47

Robust and Global Delay-Dependent Stability for Genetic Regulatory Networks With Parameter Uncertainties

Li-Ping Tian,, Jianxin Wang,, Fang-Xiang Wu,

Journal:

IEEE Transactions on NanoBioscience

Year:

2012

Language:

english

File:

PDF, 2.97 MB

english, 2012

48

[IEEE 2011 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Boston, MA (2011.08.30-2011.09.3)] 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Estimating parameters in genetic regulatory networks with SUM logic

Tian, Li-Ping, Liu, Lizhi, Wu, Fang-Xiang

Year:

2011

Language:

english

File:

PDF, 400 KB

english, 2011

49

[IEEE 2012 IEEE 6th International Conference on Systems Biology (ISB) - Xian, China (2012.08.18-2012.08.20)] 2012 IEEE 6th International Conference on Systems Biology (ISB) - New global stability conditions for genetic regulatory networks with time-varying delays

Tian, Li-Ping, Shi, Zhong-Ke, Wu, Fang-Xiang

Year:

2012

Language:

english

File:

PDF, 770 KB

english, 2012

50

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Atlanta, GA, USA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine - Delay-Dependent Stability for Genetic Regulatory Networks

Tian, Li-Ping, Wu, Fang-Xiang

Year:

2011

Language:

english

File:

PDF, 196 KB

english, 2011

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